File:Fitzhugh-nagumo b = 2.0, separatrix.png
Summary
| Description |
English: ```python
from matplotlib.widgets import AxesWidget
import numpy as np
import matplotlib.pyplot as plt
from scipy.integrate import solve_ivp
for alpha in [0.0]:
# Define the parameter values
a = 0.7
b = 2.0 # If b < 1.5, then there are stable loops. Else there are no loops.
tau = 12.5
R = 0.1
I_ext_0 = (2/3 + (a-1)/b)/R
I_ext_1 = (-2/3 + (a+1)/b)/R
I_ext_min = min(I_ext_0, I_ext_1) - 2.0 / R
I_ext_max = max(I_ext_0, I_ext_1) + 2.0 / R
I_ext = I_ext_min * (alpha - 1.0)/(-2.0) + I_ext_max * (alpha + 1.0)/(+2.0)
# If alpha < 1, then all trajectories fall to a stable equilibrium
# If alpha > 1, and b < 1.5, then all trajectories fall to a stable loop.
# Define the system of ODEs
def system(t, y):
v, w = y
dv = v - (v ** 3) / 3 - w + R * I_ext
dw = (1 / tau) * (v + a - b * w)
return [-dv, -dw]
vmin, vmax, wmin, wmax = -2, 2, -2+R*I_ext, 2+R*I_ext
t_span = [0, 50]
trajectory_resolution = 30
initial_conditions = [(x, y) for x in np.linspace(vmin, vmax, trajectory_resolution) for y in np.linspace(wmin, wmax, trajectory_resolution)]
sols = {}
for ic in initial_conditions:
sols[ic] = solve_ivp(system, t_span, ic, dense_output=True, max_step=0.1)
vs = np.linspace(vmin, vmax, 200)
v_axis = np.linspace(vmin, vmax, 20)
w_axis = np.linspace(wmin, wmax, 20)
v_values, w_values = np.meshgrid(v_axis, w_axis)
dv = v_values - (v_values ** 3) / 3 - w_values + R * I_ext
dw = (1 / tau) * (v_values + a - b * w_values)
fig, ax = plt.subplots(figsize=(16,16))
# integral curves
for ic in initial_conditions:
sol = sols[ic]
ax.plot(sol.y[0], sol.y[1], color='k', alpha=0.4, linewidth=0.5)
# vector fields
arrow_lengths = np.sqrt(dv**2 + dw**2)
alpha_values = 1 - (arrow_lengths / np.max(arrow_lengths))**0.4
ax.quiver(v_values, w_values, dv, dw, color='blue', linewidth=0.5, scale=25, alpha=alpha_values)
# nullclines
ax.plot(vs, vs - vs**3/3 + R * I_ext, color="green", alpha=0.4, label="v nullcline")
ax.plot(vs, (vs + a) / b, color="red", alpha=0.4, label="w nullcline")
# ax.set_xlabel('v')
# ax.set_ylabel('w')
ax.set_title(f'FitzHugh-Nagumo Model\n$b={b:.2f}$\t\t$I_{{ext}} = {I_ext:.2f}}})
# ax.legend()
ax.set_xlim(vmin, vmax)
ax.set_ylim(wmin, wmax)
ax.set_xticks([])
ax.set_yticks([])
plt.show()
``` |
| Date | |
| Source | Own work |
| Author | Cosmia Nebula |
Licensing
I, the copyright holder of this work, hereby publish it under the following license:
This file is licensed under the Creative Commons Attribution-Share Alike 4.0 International license.
- You are free:
- to share – to copy, distribute and transmit the work
- to remix – to adapt the work
- Under the following conditions:
- attribution – You must give appropriate credit, provide a link to the license, and indicate if changes were made. You may do so in any reasonable manner, but not in any way that suggests the licensor endorses you or your use.
- share alike – If you remix, transform, or build upon the material, you must distribute your contributions under the same or compatible license as the original.